Showing : gpls • reset
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Meta data for gene from GEO
Annotation gpls GEOquery GEOmetadb Annotation gpls GEOquery GEOmetadb
updated 10.4 years ago by 21k • written 10.4 years ago by ▴ 200
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Fw: Meta data for gene from GEO
Annotation gpls GEOquery GEOmetadb Annotation gpls GEOquery GEOmetadb
10.4 years ago rohan bareja ▴ 200
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CRAN packages maintained by you
hexbin gpls RBGL impute Icens hopach maanova RLMM CORREP cycle hexbin gpls RBGL Icens
updated 12.5 years ago by ▴ 430 • written 12.5 years ago by ▴ 10
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Bug in package plsRglm?
gpls gpls
13.1 years ago Carlos J. Gil Bellosta ▴ 40
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842
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Bug in gpls package?
gpls gpls
13.1 years ago Carlos J. Gil Bellosta ▴ 40
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5
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2.1k
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downloading different kinds of microarray data
Sequencing Microarray Genetics Annotation gpls convert GEOquery GEOmetadb Sequencing gpls
updated 13.7 years ago by ▴ 30 • written 13.7 years ago by 21k
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getGEO problem
aCGH gpls aCGH GEOquery cycle aCGH gpls aCGH GEOquery cycle
14.2 years ago Sean Davis 21k
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GEOquery and different GPL: handle of GSE
gpls GEOquery gpls GEOquery
17.2 years ago claudio.is@libero.it ▴ 210
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Bioconductor 1.4 released
Proteomics Annotation Normalization GO Cancer CGH pamr gcrma gpls affyPLM webbioc bim
updated 20.0 years ago by ★ 13k • written 20.0 years ago by ▴ 810
9 results • Page 1 of 1
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Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0
Thank you Tim, this is a great help in getting me started!
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Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
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