Biostar Graphat

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Yeast GraphAT Yeast GraphAT

updated 14.9 years ago by Vincent J. Carey, Jr. 6.6k • written 14.9 years ago by Paul Shannon ★ 1.1k

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GO graph PROcess GraphAT GO graph PROcess GraphAT

updated 17.6 years ago by Seth Falcon ★ 7.4k • written 17.6 years ago by Denise Scholtens ▴ 70

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Comment: deseq2 normalization and statistical method by SH • 0

Thank you for answering my repeated question. Although the documentation states that normalization is not necessary, I was confused because…

Answer: Reducing dataset size to improve run time for fitGAM in tradeSeq by Koen Van den Berge ▴ 180

Hi, We recommend keeping the entire count matrix and using the genes argument. This way, you still use the data from all genes to do th…

Comment: Multiple issues reading in peak sets with Diffbind by LV • 0

I have also had this problem today with a sample sheet that appears to be just like another sheet I previously used. I also had narrow as t…

Comment: Swish: contrasts and interactions by Urwah • 0

Hi Michael, I'm performing a very similar analysis with multiple comparisons (5 groups: 1 control group & 4 treatment - want to perform …

Answer: limma with or without intercept gives different results by Gordon Smyth 47k

Subsetting the data will always change the results, as it would do for any linear model or anova analysis, not just for limma. We always re…

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Answer: deseq2 normalization and statistical method

Answer: Help with error install csaw

Comment: Help with error install csaw

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