Bioconductor Gsca

Showing : gsca • reset

0

votes

2

replies

1.4k

views

HTSanalyzeR GSCA HTSanalyzeR GSCA

updated 13.8 years ago by Xin Wang ▴ 10 • written 13.8 years ago by Dario Strbenac ★ 1.6k

0

votes

0

replies

1.3k

views

Microarray Clustering genefilter GSCA Microarray Clustering genefilter GSCA

14.0 years ago Thorsten Forster ▴ 10

4

votes

3

replies

1.8k

views

Microarray GSCA Microarray GSCA

updated 14.0 years ago by Naomi Altman ★ 6.0k • written 14.0 years ago by January Weiner ▴ 240

3 results • Page 1 of 1

Recent ...

Replies

Comment: European Bioconductor Conference 2023 planning by magnificent.mollusk.nvtp • 0

I once co-organized a genomics meetup where logistics, speaker balance, and outreach felt like solving a live [connections game](https://co…

Answer: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by Michael Love 43k

I'm not familiar with this usage, or code here ``` normFactors <- exp(-1 * offst(set2)) ``` In the RNA-seq gene-level workflow, we …

Answer: Which of apeglm and ashr may be more appropriate for pseudobulked DESeq2 analysi by Michael Love 43k

> apeglm appears much more aggressive in shrinkage, pushing many genes toward logFC = 0 > ashr maintains a gradient of shrinkage val…

Comment: voomLmFit fitted log-CPM values by Gordon Smyth 53k

The fitted values are on the log2CPM scale. I would have told you if they were not! I think you may be getting confused by the differences…

Comment: voomLmFit fitted log-CPM values by Lina ▴ 10

Is the output from fitted(v) in the log2 CPM scale? or CPM scale?

Votes

A: How barcode-plot enrichment is calculated?

Answer: ROAST compare results with complex design

Awards • All