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gsealm
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emacs org mode html export using jQuery DataTables (WAS: new package for generating interactive HTML reports)
Network
limma
GOstats
GSEAlm
edgeR
ReportingTools
Network
limma
GOstats
GSEAlm
edgeR
11.3 years ago
Malcolm Cook
★ 1.6k
0
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12
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2.2k
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new package for generating interactive HTML reports
Network
limma
GOstats
GSEAlm
edgeR
ReportingTools
Network
limma
GOstats
GSEAlm
edgeR
updated 11.3 years ago by
Malcolm Cook
★ 1.6k • written 11.3 years ago by
Josh Kaminker
▴ 20
0
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1
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1.0k
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Help with GSEAlm
biomaRt
GSEAlm
biomaRt
GSEAlm
updated 11.8 years ago by
James W. MacDonald
65k • written 11.8 years ago by
b1gorsuch@comcast.net
▴ 20
0
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0
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763
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question on GSEAlm
GSEAlm
GSEAlm
15.3 years ago
Mark W Kimpel
▴ 830
0
votes
2
replies
1.3k
views
confused about J-G statistic of GSEAlm
GO
GSEAlm
GO
GSEAlm
updated 15.4 years ago by
rgentleman
★ 5.5k • written 15.4 years ago by
Mark W Kimpel
▴ 830
0
votes
2
replies
1.2k
views
using GSEAlm with GO geneSetCollections
GO
affy
goTools
Category
GSEABase
GSEAlm
GO
affy
goTools
Category
GSEABase
GSEAlm
updated 15.5 years ago by
Dykema, Karl
▴ 90 • written 15.5 years ago by
Mark W Kimpel
▴ 830
0
votes
0
replies
655
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Finding genes with significant linear regression, or trend
GSEAlm
GSEAlm
15.9 years ago
Assaf Oron
▴ 40
7 results • Page
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Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
swbarnes2
★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error
by
James W. MacDonald
65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Comment: get BM error
by
Fara
• 0
Thank you for your response. The primary reason for translating Ensembl IDs into Entrez Gene IDs is to perform KEGG (Kyoto Encyclopedia of…
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function
by
James W. MacDonald
65k
That's weird. I don't have any problem at all generating the `OrgDb` on my box. How big is the gene2pubmed.gz file? I get this: ``` gzip -…
Votes
Answer: get BM error
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
Comment: Different Shrunk Log2FC according with reference
Reproducibility issue with scran together with lapply and BiocParallel
C: SGSeq: moving toward diffex from SGSeq analysis
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