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affyPLM crashing R
affyPLM Harshlight affyPLM Harshlight
updated 11.7 years ago by ★ 13k • written 11.7 years ago by ★ 13k
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How does one deal with spatial effects detected on single channel microarrays?
Microarray Normalization hu6800 affy gcrma marray nnNorm Harshlight Microarray hu6800
11.9 years ago Scott Robinson ▴ 130
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arrayQualityMetrics subscript out of bounds error and Harshlight error
affy Harshlight affy Harshlight
updated 13.7 years ago by ★ 13k • written 13.7 years ago by ▴ 180
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error in replacing erroneous values in Harshlight package
Harshlight Harshlight
14.5 years ago vasantika s ▴ 30
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Harshlight (or similar) for Agilent arrays
Harshlight Harshlight
15.9 years ago David Garfield ▴ 30
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Affxparser: how to create CEL-file from AffyBatch
cdf affxparser Harshlight cdf affxparser Harshlight
updated 17.2 years ago by 68k • written 17.2 years ago by ★ 4.1k
6 results • Page 1 of 1
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Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k
Your approach 1 is a bad idea. Subtracting the gene counts won't do what you want to do. I would personally check to see if there is any…
Comment: Can NanoString data be analyzed using DESeq2? by James W. MacDonald 68k
You can always discard, although you can also retain them to check for unexpected differences.
Comment: DESeq2 on NanoString Data by Michael Love 43k
Yes, if I discern a batch from EDA including looking at PCs, sample correlations, etc. It is close to SVA, we discuss both in the workflow…
Comment: DESeq2 on NanoString Data by thkapell ▴ 10
Thanks Michael. To this end, do you routinely use RUV or only when you detect a batch? It looks like it works in a similar fashion to SVA w…
Comment: Can NanoString data be analyzed using DESeq2? by thkapell ▴ 10
Thank you. I agree with your thoughts about the similarities of NanoString with RNA-seq. NanoString though, also has positive, negative pro…
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Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
Can NanoString data be analyzed using DESeq2?
Comment: Are voomByGroup and voomLmFit compatible?
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