Bioconductor Harshlight

Showing : harshlight • reset

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affyPLM Harshlight affyPLM Harshlight

updated 12.0 years ago by Wolfgang Huber ★ 13k • written 12.0 years ago by Guest User ★ 13k

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Microarray Normalization hu6800 affy gcrma marray nnNorm Harshlight Microarray hu6800

12.1 years ago Scott Robinson ▴ 130

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1.7k

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affy Harshlight affy Harshlight

updated 14.0 years ago by Wolfgang Huber ★ 13k • written 14.0 years ago by Matthew McCormack ▴ 180

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930

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Harshlight Harshlight

14.8 years ago vasantika s ▴ 30

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Harshlight Harshlight

16.1 years ago David Garfield ▴ 30

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cdf affxparser Harshlight cdf affxparser Harshlight

updated 17.4 years ago by James W. MacDonald 68k • written 17.4 years ago by Guido Hooiveld ★ 4.1k

6 results • Page 1 of 1

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Comment: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k

It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …

Comment: problem reading bam files into nucleR by efoss ▴ 10

I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…

Answer: two questions about limma by Gordon Smyth 53k

Answered here: https://support.bioconductor.org/p/16318/

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0

Thank you very much! will take that into consideration

Comment: Large logFC but somewhat high FDR by JKim • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.

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Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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Popular Question to James W. MacDonald 68k