Bioconductor Hgnc

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ensembl symbol hgnc biomart

updated 6.4 years ago by James W. MacDonald 68k • written 6.4 years ago by foehn ▴ 100

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gviz ucsctrack hgnc

updated 8.4 years ago by James W. MacDonald 68k • written 8.4 years ago by Greg G. • 0

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biomart HGNC

updated 9.9 years ago by Gordon Smyth 53k • written 9.9 years ago by aush ▴ 40

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Comment: Postdoctoral Research Position in Cancer Genomics at Dana-Farber Cancer Institut by Agatha • 0

A postdoctoral position in cancer genomics at the Guo-Cheng Yuan Lab sounds like an amazing career move. Their work combines computational …

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by Gordon Smyth 53k

MDS of what quantity? LogCPM from `cpm()`? I don't have a definitive answer, but my feeling that is that library size effects are to be ex…

Comment: Merge multiple genomic intervals if overlapping more than xx percents by Lime • 0

I think this site is very useful if you are doing similar work (genomic intervals, peaks, ChIP-seq, etc.) because: There is sample code tha…

Comment: How to do simple Fisher' exact test for overlapped genomic interval in R? by Mina • 0

If I were you, I would do the following to make sure: Collect the overlapping regions into two BED files or two datasets. Use bedtools merg…

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by abaed • 0

Apologies for not clarifying earlier, you're right: it is a PCA, not an MDS. In local machine, computing the MDS takes quite a long time, P…

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Comment: readDNAStringSet with non DNA characters

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