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Comment: Check removeBatchEffect effectiveness
by
massimo
•
0
Sorry for the delay, here it is my code which displays the warning message:
Normalization:
countsdge <- DGEList(counts, timepoint, ge…
Answer: blockwiseModule crashes in the end and doesn't generate modules
by
phylliskeller162
•
0
Crave adrenaline, music, and pixel-perfect jumps? [Geometry Dash][1] delivers it all in one pulse-pounding ride!
[1]: https://geomet…
Comment: How to extract coordinates of mismatches from a BAM file lodaded in as a GAlignm
by
Charles
•
0
I am trying this but it is slow.
```
aln2mismatches <- function (gal) {
gr <- GRanges(gal)
irl <- cigarRangesAlongReferenceSpace(cigar…
Answer: DESeq2 Apeglm Coefficient Reordering / Log2FoldChange Comparison Change
by
James W. MacDonald
68k
Yes, you can simply flip the sign of the logFC to reverse the direction of the comparison.
Comment: Heatmap of a transformed deseq object with pheatmap
by
James W. MacDonald
68k
The argument for annotation_col is meant to be a `data.frame`, not a vector. The hint in the error is that it has the wrong number of dimen…
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