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Answer: KEGG enrichment in R and gene IDs
by
Guido Hooiveld
★ 3.6k
Please note that `ENTREZID` == `ncbi-geneID`, so it seems to me you have KEGG-compatible IDs. Reading between the lines it **seems** tha…
Answer: How edgeR estimate the common dispersion?
by
Dan
• 0
I try to answer this question. Based on the Conditional Likelihood defined in https://rss.onlinelibrary.wiley.com/doi/epdf/10.1111/j.2517-6…
Answer: Not sure what an Asymmetric MA plot means?
by
ATpoint
★ 2.4k
You asked this here already https://www.biostars.org/p/9558379/ with advise to do more prefiltering and checking normalization with control…
Comment: RUVr batch correction doubling number of DEGs
by
Zainab
• 0
Thanks Michael! This has really helped me put together my analysis!
Comment: Does it make sense to have so many statistically significant gene differentially
by
Michael Love
39k
Use group in ggplot to connect the pairs.
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Comment: RUVr batch correction doubling number of DEGs
Comment: RUVr batch correction doubling number of DEGs
Answer: RUVr batch correction doubling number of DEGs
A: LogFC: how do you determine the cutoff for differentially expressed genes?
Confused about design for RNA seq experiment
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