Bioconductor Htsanalyzer

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HTSanalyzeR HTSanalyzeR

updated 12.9 years ago by Valerie Obenchain ★ 6.8k • written 12.9 years ago by Catherine Garry ▴ 30

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HTSanalyzeR GSCA HTSanalyzeR GSCA

updated 13.0 years ago by Xin Wang ▴ 10 • written 13.1 years ago by Dario Strbenac ★ 1.5k

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Comment: Epic v2 Annotation CpG_maf source? by Meghan • 0

Thank you, so much, for this reply!

Comment: txdb.mmusculus.ucsc.mm10.knowngene issue on X chromosome by remi-xavier.coux ▴ 10

That indeed worked, thanks a lot for the help (and for karyoploteR)

Comment: conumee with Infinium MethylationEPIC v2.0 by fraober • 0

i also have the same issue, if anyone managed to find a solution it would be great if you could share it! (EPICv2 samples + conumee2 (not c…

Comment: Conumee with EPICv2 Segment function by fraober • 0

i also have the same issue, if anyone managed to find a solution it would be great if you could share it! (EPICv2 samples + conumee2 (not c…

Comment: txdb.mmusculus.ucsc.mm10.knowngene issue on X chromosome by bernatgel ▴ 150

James is right, it is using "hg19" if no genome is specified. The other regions probably worked because they are also correct on the human …

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Answer: Epic v2 Annotation CpG_maf source?

Answer: bioconductor packages on bioconda

Filtering low variance genes for WGCNA

A: Filtering low variance genes for WGCNA

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