Bioconductor Htsanalyzer

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HTSanalyzeR HTSanalyzeR

updated 13.2 years ago by Valerie Obenchain ★ 6.8k • written 13.2 years ago by Catherine Garry ▴ 30

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HTSanalyzeR GSCA HTSanalyzeR GSCA

updated 13.4 years ago by Xin Wang ▴ 10 • written 13.4 years ago by Dario Strbenac ★ 1.6k

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Answer: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran by Aaron Lun ★ 28k

It's calling C++ code, see the relevant function definitions on [GitHub](https://github.com/knncolle/BiocNeighbors/blob/master/src/generics…

Answer: DESeq2 by ATpoint ★ 4.8k

Time courses are often inevitable batches but you should have done the library prep at the same day, just extract RNA per day. If not then …

Comment: Package developing and interoperation with Bioconductor by slizchap • 0

Thank you so much for your answer. This was very useful, I will optimize my functions so they can handle SE objects.

Comment: Package developing and interoperation with Bioconductor by slizchap • 0

Thank you so much for your answer, very useful!

Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files by Mike Smith ★ 6.6k

Tricky to try and debug this without some example files to work with. Can you provide the output of `traceback()` called immediately after…

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Comment: ComBat with repeated measures

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