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Answer: tximport: Error in is(txi, "list") : argument "txi" is missing, with no default
by
James W. MacDonald
64k
The arguments for that function can be found in the help page (accessed using `?DESeqDataSetFromTximport`)
```
Usage:
DESeqDataSet(s…
Answer: tximport: Error in is(txi, "list") : argument "txi" is missing, with no default
by
Michael Love
41k
argument txi is missing, with no default
This means the function was expecting a named argument txi
Check the man page for the funct…
Comment: Problem loading HDF5Array in R 4.3.2
by
Sarah
•
0
Thank you so much! This worked!
It installed from source with no problem and after restarting my R session, everything loads properly now.…
Answer: bam or VCF files from GSE75010
by
James W. MacDonald
64k
You must be confused. Those are expression arrays, not genotyping, so you cannot do a 'variant calling analysis', whatever you mean by that…
Comment: locateVariant from VariantAnnotation returns wrong results
by
James W. MacDonald
64k
You can also just stuff that 'z' object into an env and use that.
```
> cache <- new.env(parent = emptyenv())
> z <- intronsByTranscript(T…
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