updated 7.9 years ago by
James W. MacDonald
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written 7.9 years ago by
Guido Hooiveld
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Comment: Feature Counts - potential bug with outfile.jcounts
by
Gordon Smyth
52k
I agree that the current behavior is not fully satisfactory and, indeed, it has prevented me from using the junction read counts from featu…
Comment: Feature Counts - potential bug with outfile.jcounts
by
chris2.a.white
•
0
Hi Gordon,
Sorry, I didn't see the added response to your original answer.
I think that would be a great idea; a novel junction to annot…
Comment: Cannot install GO.db and org.Hs.eg.db
by
Gabriel
•
0
The downloaded source packages are in
'C:Users\gabri\AppData\Local\Temp\RtmpailNer\downloaded_packages'
Installation paths not writeable, …
Comment: Feature Counts - potential bug with outfile.jcounts
by
chris2.a.white
•
0
Hi Gordon,
Thank you for pointing out that FeatureCounts detects junction reads de novo. It is not in the manual, and maybe could be.
Give…
Answer: Pre-filtering TPM kallisto for ssGSEA / DESeq2
by
Michael Love
43k
I've seen in some papers ~1 TPM for saying something in mouse/human etc. was "minimally expressed".
For an average length gene, 10 count…
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