updated 10.5 years ago by
Wolfgang Huber
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written 10.6 years ago by
Alex Gutteridge
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Comment: deseq2 normalized data with heatmap
by
Kevin Blighe
3.1k
Hey Ian, specifically just for the heatmap and/or the clustering, we can additionally scale and center the `vsd` or `rld` data.
The `scale…
Answer: Difference in mixed test for fry vs mroast
by
Gordon Smyth
43k
That's a fair question and you're right that the fry/mroast help page doesn't give currently enough information about the mixed p-values.
…
Comment: deseq2 normalized data with heatmap
by
Ian
•
0
Hey @kevin , Thanks for the helpful posts!
I noticed in your link to this heatmap analysis, you used scale() and not vst(). However, in yo…
Comment: lmFit, continuous exposure, adjustment covariates
by
AyHi
•
0
Dear Gordon,
Thank you so much for your reply. It worked well!
I just changed y to t because the protein values were included in dat in my…
Answer: To retrieve the transcript from gff file with the longest isoform
by
James W. MacDonald
57k
Neither biomartr, nor orthologr are Bioconductor packages, so this isn't the place to ask questions about them.
However, the question yo…
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