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Comment: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf
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earntodiesaz
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I'm delighted to have the chance to engage in conversation with your blog; I'm looking forward to reading more posts that can be relied upo…
Comment: Guidance Needed: Best Practices for Handling Technical Replicates in RNA-seq Ana
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earntodiesaz
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To be honest with you, I must say that it was an exceptionally good post. Writing it down and reading it during my lunch break was a very e…
Comment: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with
by
Gordon Smyth
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I generally recommend `block=individual` for unbalanced designs, to recover information from incomplete blocks. I would only be disuaded fr…
Comment: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with
by
Devin
▴
10
Thank you, Gordon, for your responses to all of my questions. For analysis A), in the case when a patient has either a missing timepoint or…
Comment: Using TPM from tximport of Salmon output for singscore
by
Kent
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0
Thanks Michael. Just out of curiosity, would you also use the same technique for things like clustering analysis or when looking at the abn…
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