Bioconductor Json

Showing : json • reset

0

votes

0

replies

533

views

lexicalerror rDGIdb DGIdb json

21 months ago Dennis • 0

0

votes

0

replies

2.0k

views

biomformat json

8.9 years ago grp2009 • 0

0

votes

1

reply

2.6k

views

biom json hdf5 qiime phyloseq

updated 9.2 years ago by Bernd Fischer ▴ 550 • written 9.2 years ago by newmanss • 0

3 results • Page 1 of 1

Recent ...

Replies

Answer: Confounded design, batch effect correction (edgeR) by nig.httopss • 0

To perform gene matching accurately, you should use the formula ~0 + Group + Batch in the design matrix to better manage sample groups. Sin…

Comment: Clarification on counting in Rsubread (featureCounts) by Gordon Smyth 53k

Have you told featureCounts to do strand-specific counting? As pointed out by Frances Turner, you can lose reads if they overlap the gene …

Answer: Clarification on counting in Rsubread (featureCounts) by Frances Turner ▴ 10

You should look at the summary files produced by feature counts. This gives a breakdown of what happened to reads that were not assigned. Y…

Comment: Incosistencies in buildSNNGraph() function by ATpoint ★ 5.0k

Just played with this a bit and I think it comes down to not having a fixed seed before running the leiden thingy. Same goes for PCA and UM…

Answer: Incosistencies in buildSNNGraph() function by Aaron Lun ★ 29k

The most obvious thing that comes to mind is the RNG seed. `cluster_leiden()` does some random number generation, somewhere deep in the **i…

Votes

A: Conversion from counts to FPKM

Answer: Incosistencies in buildSNNGraph() function

Awards • All

Great Question to fl ▴ 20

Popular Question to Lluís Revilla Sancho ▴ 760