Bioconductor Kegggraph

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464

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igraph KEGGgraph RCy3 GraphNEL

5 months ago • updated 4 months ago Arindam ▴ 80

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538

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enrichKEGG KEGGgraph KEGG

updated 12 months ago by Guido Hooiveld ★ 4.1k • written 12 months ago by cinzia.spagnoli • 0

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777

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KEGGgraph KEGG

updated 8 months ago by Guido Hooiveld ★ 4.1k • written 8 months ago by Fara • 0

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592

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KEGGREST GenomicDistributionsData KEGGgraph KEGG

updated 9 months ago by Guido Hooiveld ★ 4.1k • written 9 months ago by fernanda.backsouza ▴ 30

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429

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KEGGgraph org.Cs.eg.db clusterProfiler KEGG AnnotationHubSoftware

updated 9 months ago by James W. MacDonald 68k • written 9 months ago by fernanda.backsouza ▴ 30

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Comment: GSVA on RNAseq data by Robert Castelo ★ 3.4k

Hi Bob, I have not investigated whether a particular unit of expression works better than others, but using logTPM or logCPM units of expr…

Answer: Store Matrix in DataFrame Cell by James W. MacDonald 68k

Put it in a list and put the list in a column.

Comment: For some reason I can't update BiocManager to 3.20 by James W. MacDonald 68k

Please post output from starting R and then running `sessionInfo()` (as requested by the web form you use to post questions). I get ``` > …

Comment: p-value the same for different contrasts DESeq2 by caroline.zanchi • 0

It would be great if it were possible to do something similar using GlmGamPoi !

Comment: Web accessibility of Bioconductor.org by Sean Davis 21k

Added issue to website github repo: https://github.com/Bioconductor/bioconductor.org/issues/304

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Popular Question to Robert Castelo ★ 3.4k