Bioconductor EnrichKEGG

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1.6k

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KEGG enrichKEGG R entrezid

6 months ago Laia ▴ 10

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1.5k

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clusterProfiler enrichKEGG

updated 17 months ago by Guido Hooiveld ★ 3.7k • written 17 months ago by blim4 • 0

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3.0k

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clusterProfiler enrichKEGG cnetplot

22 months ago fatimaruizdelabastida • 0

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933

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enrichplot clusterProfiler enrichKEGG gseKEGG

4.6 years ago yurigorelik ▴ 10

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601

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enrichKEGG GeneRatio

4.6 years ago zhang.jianhai ▴ 10

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1.1k

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kegg enrichkegg clusterprofiler

5.2 years ago bekah ▴ 20

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2.7k

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clusterprofiler kaas enrichKEGG

updated 6.2 years ago by renuka.nayak • 0 • written 7.1 years ago by googneed • 0

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Comment: DMRcate design by Jitendra ▴ 10

Thanks James, do I also need to mention 'contrasts=FALSE' in cpg.annotate.And also what to mentions in analysis.type="differential",/ "ANO…

Comment: Speeding up of DelayedArray::write_block() by Koki ▴ 10

I don't know the details but do you mean using `HDF5RealizationSink` or `TENxRealizationSink` will make it possible to writing sparse multi…

Comment: DelayedArray::read_sparse_block by Koki ▴ 10

Ok, I understood. How about "writing" to HDF5? Are you going to implement `write_block_as_sparse` in `SparseArray` package?

Comment: DelayedArray::read_sparse_block by Hervé Pagès 16k

> So do you means the specification change from DelayedArray's read_sparse_block to SparseArray's read_block_as_sparse will accelerate the …

Comment: DelayedArray::read_sparse_block by Koki ▴ 10

Thanks for your reply. So do you means the specification change from `DelayedArray`'s `read_sparse_block` to `SparseArray`'s `read_block_a…

Votes

Answer: DMRcate design

Comment: DMRcate design

Answer: What MetaPhlAn3 database was used in cMD 3?

Comment: Speeding up of DelayedArray::write_block()

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