Bioconductor Lme4

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limma lme4 mixed

18 months ago leandro • 0

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1.5k

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variancepartition lme4 mixedmodel

updated 4.6 years ago by gabriel.hoffman ▴ 110 • written 4.7 years ago by c.taylor • 0

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901

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limma caret lm lmer lme4

updated 4.8 years ago by Aaron Lun ★ 28k • written 4.8 years ago by Sindre ▴ 110

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913

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limma edger lme4

updated 7.2 years ago by Aaron Lun ★ 28k • written 7.2 years ago by bensimon.ariel • 0

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3.5k

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rna-seq edger mixed model random effects lme4

updated 7.8 years ago by Gordon Smyth 50k • written 7.8 years ago by Ekarl2 ▴ 80

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3.2k

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illumina450k limma lme4 lmer

updated 8.0 years ago by Aaron Lun ★ 28k • written 8.0 years ago by DSP • 0

6 results • Page 1 of 1

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Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40

1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

Votes

Answer: Dominance Index for Shotgun Metagenomics Data

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

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