Bioconductor Variancepartition

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variancePartition

13 days ago • updated 12 days ago Le • 0

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variancePartition BiocParallel

4 months ago hayleyw • 0

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variancePartition RNASeqData limma BulkRNAseq RNASeq

updated 4 months ago by Gordon Smyth 50k • written 6 months ago by Gimena • 0

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variancePartition mixedmodel dream

8 months ago hayleyw • 0

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DESeq2 variancePartition

13 months ago • updated 12 months ago Weiqian ▴ 10

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RNAseq variancePartition edgeR dream

13 months ago DH • 0

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variancePa variancePartition limma-voom dream

updated 14 months ago by Gordon Smyth 50k • written 14 months ago by Le • 0

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expression variancePartition edgeR

20 months ago Jonathan • 0

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edgeR limma variancePartition

updated 2.8 years ago by Gordon Smyth 50k • written 2.8 years ago by jackgisby • 0

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limma variancePartition

updated 2.8 years ago by Gordon Smyth 50k • written 2.8 years ago by jarod ▴ 30

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variancePartition limma

3.0 years ago Junghoon ▴ 10

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variancePartition limma BiocParallel

3.0 years ago Junghoon ▴ 10

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BiocParallel limma variancePartition

3.0 years ago • updated 2.9 years ago Junghoon ▴ 10

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dream variancePartition limma differential expression repeated measures

updated 4.6 years ago by Gordon Smyth 50k • written 4.6 years ago by hermidalc ▴ 20

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variancepartition lme4 mixedmodel

updated 4.6 years ago by gabriel.hoffman ▴ 110 • written 4.7 years ago by c.taylor • 0

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limma voom variancePartition dream

updated 4.6 years ago by gabriel.hoffman ▴ 110 • written 4.8 years ago by Ben ▴ 50

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Answer: Get genomic coordinates of CpGs sites (chromosomes, genomic position) by James W. MacDonald 65k

You don't say what array that is, so I will guess. ``` > library(IlluminaHumanMethylationEPICanno.ilm10b4.hg19) > Locations DataFrame…

Answer: SGSeq: moving toward diffex from SGSeq analysis by Leonard Goldstein ▴ 200

`vid` and `eid` are unique identifiers for splice variants and splicing events respectively. They are analogous to exon bin and gene identi…

Comment: Help with error using camera() in limma by Chris • 0

Thanks James! I fixed the error. I try gene symbol instead of entrez and it worked.

Comment: limma for gene expression analysis with big and unbalanced sample size by XW • 0

Could you explain more about the comment "there are no problems with using limma for unbalanced data sets" ? thanks.

Comment: Limma, eBayes different sample size of groups and adjustment by XW • 0

Could you explain more about how the analysis self-correct the different sample sizes when calling DEGs in limma? Thanks

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SPIA plotP giving error

Answer: Fold change calculation in Diffbind vs. DESEQ2?

C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB

C: Extremely big genes in annotation TxDb packages

Make custom Txdb class objects from Txdb

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