Showing : variancepartition • reset
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How many parameters should be included in the model design for deseq2?
DESeq2 variancePartition
2 days ago Weiqian ▴ 10
1
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4
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156
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Repeated Measures-Cross Over Study for RNAseq data using variancePartition::dream
RNAseq variancePartition edgeR dream
18 days ago • updated 16 days ago DH • 0
0
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5
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213
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Semi-technical replicates and voom sample weights
variancePa variancePartition limma-voom dream
updated 28 days ago by 47k • written 4 weeks ago by • 0
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164
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Argument is of length zero in variancePartition/Dream
expression variancePartition edgeR
7 months ago Jonathan • 0
1
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1
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621
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Repeated measures RNAseq analysis (edgeR or limma-voom)
edgeR limma variancePartition
updated 20 months ago by 47k • written 20 months ago by • 0
1
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3
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760
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limma - contrast matrix hypothesis testing
limma variancePartition
updated 21 months ago by 47k • written 21 months ago by ▴ 20
1
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0
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441
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What are cov.coefficients and cov.coefficients.list returned by dream()?
variancePartition limma
23 months ago Junghoon ▴ 10
0
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1
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717
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Error while running variancePartition::dream()
variancePartition limma BiocParallel
23 months ago Junghoon ▴ 10
0
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1
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633
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Excessive memory requirement of variancePartition::dream()
BiocParallel limma variancePartition
23 months ago • updated 21 months ago Junghoon ▴ 10
7
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11
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1.3k
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dream vignette says limma-voom repeated measures two-group comparison needs two duplicateCorrelation rounds which differs from limma user's guide and…
dream variancePartition limma differential expression repeated measures
updated 3.5 years ago by 47k • written 3.5 years ago by ▴ 10
3
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8
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840
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Results from variancePartition not matching those from lme4
variancepartition lme4 mixedmodel
updated 3.5 years ago by ▴ 90 • written 3.6 years ago by • 0
4
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3
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1.1k
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Blocking factor in limma/voom vs. variancePartition/dream analysis.
limma voom variancePartition dream
updated 3.5 years ago by ▴ 90 • written 3.8 years ago by ▴ 50
12 results • Page 1 of 1
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Comment: How to combine two DESeq2 objects (dds) for analysis by Luke • 0
thanks ATpoint
Comment: How to combine two DESeq2 objects (dds) for analysis by Luke • 0
thanks Tzu
Answer: LmFit error in EPIC methylation array analysis, Minfi by Gordon Smyth 47k
The error message tells you what the problem is. You've formed the design matrix incorrectly. If fact your design matrix doesn't even conta…
Comment: Help with Error in DiffBind by Chris • 0
Thanks Rory! Would you please tell me how to get gain and loss in binding sites? My plot doesn't have them. How to get annotate genes from …
Comment: Unable to upload an App in shinyapps.io with bioconductor packages by Hamid • 0
Upvoted, cuz it worked for me!
Votes
Comment: Gene Onotology: Can't get the goana function to work
Answer: Unable to upload an App in shinyapps.io with bioconductor packages
Comment: Help with Error in DiffBind
A: How to deal with Affymetrix GeneChip probeids that map to multiple genes
Comment: Failed to install Biobase
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