Bioconductor Variancepartition

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418

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DESeq2 variancePartition

10 weeks ago • updated 6 weeks ago Weiqian ▴ 10

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264

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RNAseq variancePartition edgeR dream

12 weeks ago DH • 0

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329

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variancePa variancePartition limma-voom dream

updated 3 months ago by Gordon Smyth 47k • written 3 months ago by Le • 0

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205

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expression variancePartition edgeR

9 months ago Jonathan • 0

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748

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edgeR limma variancePartition

updated 22 months ago by Gordon Smyth 47k • written 22 months ago by jackgisby • 0

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842

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limma variancePartition

updated 23 months ago by Gordon Smyth 47k • written 23 months ago by jarod ▴ 20

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492

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variancePartition limma

2.1 years ago Junghoon ▴ 10

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778

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variancePartition limma BiocParallel

2.1 years ago Junghoon ▴ 10

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709

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BiocParallel limma variancePartition

2.1 years ago • updated 23 months ago Junghoon ▴ 10

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1.5k

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dream variancePartition limma differential expression repeated measures

updated 3.7 years ago by Gordon Smyth 47k • written 3.7 years ago by hermidalc ▴ 20

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963

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variancepartition lme4 mixedmodel

updated 3.7 years ago by gabriel.hoffman ▴ 90 • written 3.8 years ago by c.taylor • 0

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1.2k

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limma voom variancePartition dream

updated 3.7 years ago by gabriel.hoffman ▴ 90 • written 3.9 years ago by Ben ▴ 50

12 results • Page 1 of 1

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Comment: Genelist input for ClusterProfiler by Sofia • 0

Hi Kevin, the input of gseKEGG is the same input of gseGO? I appreciate any help

Answer: error in ChAMP loading file by francis10bacon • 0

Confirm that the IDAT files are in the correct directory and follow the required naming convention. Make sure the IDAT files are compatible…

Comment: Interpret plot from DiffBind by Chris • 0

I sorted Fold decreasing. When I filter out genes with fold > 2.5 and filter out genes with fold < -2.5 and got 1287 genes appear in both s…

Comment: Interpret plot from DiffBind by Chris • 0

Thank you so much. I think the function is `dba.report()`. more_open_in_disease: 79113 more_closed_in_disease: 36828 So there are 79113 pea…

Comment: Interpret plot from DiffBind by Chris • 0

Hi Rory, when I run your code, I got this error: Error: unexpected ')' in: " matrices_color=list(c("white", "ma…

Votes

A: Renaming the seqlevels in a transcript database from GenomicFeatures

A: ggbio error: Objects of type OrganismDb not supported by autoplot

Answer: DeSEQ 2 Error: some values in assay are negative

DESeq2 Error from Installing a Package

Answer: Using PEER to identify hidden confounders in RNA-seq data (not working)

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