updated 6.4 years ago by
Valerie Obenchain
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written 6.4 years ago by
ben.ward
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Comment: performing the differential binding in ChIP-seq
by
ATpoint
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Cross-posted https://www.biostars.org/p/9524012/#9524012
Comment: Transcript-level differential expression using DESeq2
by
Ekta
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0
Yes, i tried that. I used salmon bootstraps also for the same RNAseq data to run Swish and performed the Differential transcript expressio…
Comment: how to make a group to apply the data to CAMERA
by
Akira
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0
Thank you so much for your quick answer!!
I will look into them!
I appreciate your kind support.
Comment: performing the differential binding in ChIP-seq
by
Bogdan
▴
640
I am asking the question because we have two sets of ChIP-seq data for a histone mark (lets' say H3K4me1) that were generated with :
<> an…
Comment: performing the differential binding in ChIP-seq
by
Bogdan
▴
640
Thank you. Yes, DiffBind might be a good choice shall we have replicates per sample.
Another choice is MA-norm2. Any other well-tested sug…
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