Bioconductor Mass cytometry

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deseq2 mass cytometry CyTOF

updated 4.9 years ago by Michael Love 43k • written 4.9 years ago by mikhael.manurung ▴ 280

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cydar mass cytometry

updated 6.2 years ago by Aaron Lun ★ 29k • written 6.2 years ago by kenneth.baker • 0

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Answer: replace cat with message in glmTreat when lfc = 0 by Gordon Smyth 53k

Yes, I agree that the message should be a `message` rather than `cat` output, and the message is perhaps not needed at all, because anyone …

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by Gordon Smyth 53k

How did you make this plot? I've never seen an MDS plot from limma/edgeR with axis scale going from -200 to 200. Personally, I would go ah…

Comment: readDNAStringSet with non DNA characters by biomiha ▴ 20

DECIPHER does the trick, thank you!

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by James W. MacDonald 68k

It may not be that common for bulk RNA-Seq, but in my experience it's very common for bulk miRNA-Seq.

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by abaed • 0

Nice. That's great to hear. `sva` was actually the next step I was planning to try. My colleagues haven't seen this kind of pattern before …

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Comment: readDNAStringSet with non DNA characters

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