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CyTOF
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778
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flow cytometry differential expression through time
cytofWorkflow
cytof
diffcyt
3.6 years ago
achaillon
• 0
0
votes
0
replies
1.5k
views
Error from FlowSom to Cytofast
Cytofast
FlowSom
CyTOF
fcs files
3.8 years ago
domenico.somma
• 0
1
vote
5
replies
1.1k
views
CyTOF Differential Abundance Analysis using DESeq2
deseq2
mass cytometry
CyTOF
updated 3.8 years ago by
Michael Love
42k • written 3.8 years ago by
mikhael.manurung
▴ 280
0
votes
0
replies
677
views
Concatenating different runs from the same pool of barcoded CyTOF samples
batch effect
cytof
4.4 years ago
mikhael.manurung
▴ 280
1
vote
6
replies
1.7k
views
Re: Cydar. Can I Normalize CyTOF data with just one FCS file/batch and if so, which normalization mode is recommended?
Cydar
CyTOF
normalization
updated 4.9 years ago by
Aaron Lun
★ 28k • written 4.9 years ago by
ghogg
• 0
2
votes
4
replies
991
views
Cydar's countCells tolerance parameter for arcsinh-transformed data
cydar
CyTOF
updated 5.4 years ago by
Aaron Lun
★ 28k • written 5.4 years ago by
mikhael.manurung
▴ 280
2
votes
2
replies
1.4k
views
Cytofkit - Trouble with writing files after performing the analysis
cytofkit
cytof
write.csv
output
updated 7.7 years ago by
chen_hao
▴ 30 • written 7.7 years ago by
cjackson13
• 0
1
vote
2
replies
2.8k
views
Errors when reading CyToF flowSet into flowCore
flowCore
flowcore
CyToF
Rtsne
updated 9.0 years ago by
Jiang, Mike
★ 1.3k • written 9.0 years ago by
clevy
▴ 10
8 results • Page
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Replies
Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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Lluís Revilla Sancho
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to
maltethodberg
▴ 180
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Michael Love
42k
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Leonardo Collado Torres
★ 1.1k
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Gordon Smyth
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