Bioconductor CyTOF

Showing : CyTOF • reset

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1.0k

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cytofWorkflow cytof diffcyt

4.4 years ago achaillon • 0

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1.7k

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Cytofast FlowSom CyTOF fcs files

4.6 years ago domenico.somma • 0

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1.5k

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deseq2 mass cytometry CyTOF

updated 4.6 years ago by Michael Love 43k • written 4.6 years ago by mikhael.manurung ▴ 280

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848

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batch effect cytof

5.2 years ago mikhael.manurung ▴ 280

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2.2k

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Cydar CyTOF normalization

updated 5.7 years ago by Aaron Lun ★ 28k • written 5.7 years ago by ghogg • 0

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1.3k

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cydar CyTOF

updated 6.2 years ago by Aaron Lun ★ 28k • written 6.2 years ago by mikhael.manurung ▴ 280

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1.6k

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cytofkit cytof write.csv output

updated 8.5 years ago by chen_hao ▴ 30 • written 8.5 years ago by cjackson13 • 0

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3.1k

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flowCore flowcore CyToF Rtsne

updated 9.8 years ago by Jiang, Mike ★ 1.3k • written 9.8 years ago by clevy ▴ 10

8 results • Page 1 of 1

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Comment: Limma trend with limpa by Alejandro • 0

Dear Gordon, Thank you very much!

Answer: DESeq2 from phyloseq error by asafpr • 0

Apparently, I left this line: ```r setClassUnion("ExpData", c("matrix", "SummarizedExperiment")) ``` to patch the ExpData issue which was …

Comment: Discrepancies in normalised count data vs unnormalised by AMgroup • 0

Thank you for your reply! There are some pretty big discrepancies in the total raw counts between samples: ![enter image description here…

Answer: Limma trend with limpa by Gordon Smyth 52k

Dear Alejandro, Thanks for your interest. No, one does not set `trend=TRUE` when running eBayes() after dpcDE(). The variance trends are …

Comment: Check removeBatchEffect effectiveness by Gordon Smyth 52k

Both of your matrices, `design_batcheffects` and `design_timepoint`, span the intercept term, which will cause a warning about NA coefficie…

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Comment: Check removeBatchEffect effectiveness

Answer: Check removeBatchEffect effectiveness

A: what should I do with many zero counts from Salmon quantification

Comment: parameters of filterByExpr

GAlignments Cigar to GRanges

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Popular Question to James W. MacDonald 68k