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Comment: Correct use of Likelihood Ratio Test and LFC Shrinkage
by
ayabalbaa1990
•
0
Hi Michael,
So I use this
res_LRT <- results(dds_lrt)
r2=lfcShrink(dds_lrt, coef=7, res=res_LRT)
tu run lfcshrink with LRT, is that oko?…
Comment: Combat and dds Object
by
shaimaa
•
0
I used the combat-seq but the deseq complain as its not integer what should i do
Answer: Different summary() and results() values in DeSeq2
by
Basti
▴
540
summary() tells you the number of genes with low counts, see independant filtering of results in the DESeq2 vignette : https://www.biocondu…
Comment: Atena package - error (new user)
by
beatriz.calvo
▴
30
Hi Lalani,
We have fixed the bug that lead to the error. The new version of the package (with the bug fixed) will be available in 24-48h. …
Answer: mas5calls function doesn't work; mirna40cdf problem
by
James W. MacDonald
62k
You cannot use `mas5calls` on a miRNA-4_0 array. There are no MM probes on that array, so it is not possible to get MAS-5.0 calls, because …
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