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mbd-seq
•
reset
0
votes
2
replies
337
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DiffBind for MBD-seq
MBD-seq
DiffBind
12 weeks ago
Marianna
▴ 20
0
votes
0
replies
592
views
Using MBD score in MBD-seq
mbd-seq
MethylSeq
21 months ago
Marianna
▴ 20
1
vote
1
reply
1.2k
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addPatternDensity in 'qsea' takes too much time
MBD-seq
qsea
BiocParallel
updated 3.9 years ago by
Matthias Lienhard
▴ 280 • written 3.9 years ago by
mbk0asis
• 0
0
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0
replies
1.0k
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Analysis of MBD-seq data without ssl control using BayMeth
Baymeth
methylation
MBD-seq
Repitools
8.5 years ago
pm2015
• 0
4 results • Page
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Answer: ANOVA like approach of edgeR
by
Gordon Smyth
51k
You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…
Answer: Create Illmina bead summary data
by
Gordon Smyth
51k
GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…
Comment: Help with RSEM counts: do I transpose matrix?
by
NB
• 0
OK thank you.
Comment: Help with RSEM counts: do I transpose matrix?
by
James W. MacDonald
67k
You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.
Comment: Help with RSEM counts: do I transpose matrix?
by
NB
• 0
Thank you. If I have questions about QC/normalization, do I ask them here or ask a new question?
Votes
Answer: ANOVA like approach of edgeR
Answer: ANOVA like approach of edgeR
Comment: ANOVA like approach of edgeR
Answer: Detecting genomic signatures of drug resistance breast cancer in transcriptom
Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (
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