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Comment: Load packages when using BatchtoolsParam
by
jianhai.zhang
•
0
You are right: In bplapply(), the environment of FUN (other than the global environment) is serialized to the workers. I tested `smallFun(x…
Comment: EnrichGO not working with db created from annotationhub
by
Guido Hooiveld
★
3.2k
Since I almost exclusively work with data from model organisms, I never needed to do this. So I don't have any hands-on experience with thi…
Comment: edgeR: the F-statistics changed after removing lowly expressed gene
by
Gordon Smyth
45k
There is nothing to be gained by doing analyses without filtering. We don't recommend it.
Comment: edgeR: the F-statistics changed after removing lowly expressed gene
by
Pei
•
0
Thank you Prof. Smyth!
In my case, I found that
number of significant genes tend to decrease after filtering when using glmQLFTest
but
num…
Answer: edgeR: the F-statistics changed after removing lowly expressed gene
by
Gordon Smyth
45k
glmQLFTest() function is designed to be used after expression filtering. You should apply expression filtering, regardless of whether it re…
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