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Answer: Correct script for featurecounts in Rsubread
by
James W. MacDonald
62k
Here's the relevant section from `?featureCounts`
```
Value:
A list with the following components:
counts: a data matrix c…
Comment: Can I run DESeq2 with SMART-Seq data
by
Assa Yeroslaviz
★
1.5k
thanks, the filter is the other way around, true 🙈
Comment: Can I run DESeq2 with SMART-Seq data
by
Assa Yeroslaviz
★
1.5k
I haven't seen this part before. Thanks for pointing it out.
Answer: Can I run DESeq2 with SMART-Seq data
by
Michael Love
39k
There should be no problem to run DESeq2.
You can leave the filtering to `results()` or, better, use IHW.
Your filter looks wrong, it…
Comment: Can I run DESeq2 with SMART-Seq data
by
ATpoint
★
2.4k
The choice of preprocessing is on you. There are a variety of benchmark papers and preprints you can get guidance from.
Towards prefilteri…
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