Bioconductor Mergemaid

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MergeMaid metaArray MergeMaid metaArray

13.0 years ago Adrian Johnson ▴ 330

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MergeMaid MergeMaid

14.9 years ago Lakshmi Kastury ▴ 40

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GO hgu133a MergeMaid metaArray GO hgu133a MergeMaid metaArray

updated 16.2 years ago by Martin Morgan 25k • written 16.2 years ago by rcaloger ▴ 500

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Microarray MergeMaid Microarray MergeMaid

updated 21.0 years ago by Gordon Smyth 53k • written 21.0 years ago by Silvano Piazza ▴ 50

4 results • Page 1 of 1

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Comment: gene Set with high AUC score but no cells assigned to cell type by eja.hdrer33ge.r.m • 0

Understanding complex data results like those from AUCell can be challenging. For easier analysis and better data management on the go you …

Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames by ubjw24 • 0

Thank you for your replies. I got the problem solved by installing mutSignature with this line: ``` devtools::install_github("dami82/mutS…

Comment: DESeq2 design for haplotype MPRA by Rita • 0

Thank you very much, I appreciate it!

Answer: DESeq2 design for haplotype MPRA by Michael Love 43k

> My goal is to identify which non-reference haplotypes are differentially active compared to the corresponding ref/ref haplotype within ea…

Answer: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames by James W. MacDonald 68k

It seems fine on devel as well. ``` > BSgenome.Hsapiens.UCSC.hg38 | BSgenome object for Human | - organism: Homo sapiens | - provide…

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Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?

Answer: DESeq2 design for haplotype MPRA

A: Different logFC (log2foldchange) values for genes from limma-voom and other too

Comment: Check removeBatchEffect effectiveness

Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)

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