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Comment: Advice on appropriateness of an offset in glmGamPoi/edgeR
by
Alec
• 0
Thanks Constantin! I appreciate the insight. Running a separate fit for each gene would be fine, and I'm trying out a version of the analy…
Answer: Risa package missing from Bioconductor 3.19
by
James W. MacDonald
66k
It should be, but is not being built due to a failure to pass check, [due apparently to errors in one of the help files][1]. It looks like …
Answer: Struggling to convert a large list of non-model genes into human orthologs, any
by
James W. MacDonald
66k
Normally I would suggest using the `Orthology.eg.db` package, which you can use to map between two species. Unfortunately you have what NCB…
Comment: DESeq2 ML Query
by
Michael Love
42k
Scaled counts would be `counts(dds, normalized=TRUE)` > might the flow hypothetically look like this? yes. Stick with VST, we prefer thi…
Comment: Advice on appropriateness of an offset in glmGamPoi/edgeR
by
Michael Love
42k
Not a problem :)
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Answer: Struggling to convert a large list of non-model genes into human orthologs, any
A: makeContrasts from limma overides "i" as a varible
Answer: Advice on appropriateness of an offset in glmGamPoi/edgeR
Comment: Issues with retrieving mouse SNP dataset: biomaRt error: looks like we're connec
running apeglm on a normal model and multiple coefficients
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