Bioconductor Metabolite data

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metabolite data xcms2

updated 4 months ago by Elodie • 0 • written 7.9 years ago by Yashwant ▴ 10

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metabolite data

updated 6.2 years ago by shepherl 4.1k • written 6.2 years ago by knishida ▴ 20

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limma metabolite data moderated t-test

updated 7.4 years ago by Aaron Lun ★ 28k • written 7.4 years ago by iglezer • 0

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metaboliteData pcaMethods pcamethods r package metabolite Data

updated 8.0 years ago by Valerie Obenchain ★ 6.8k • written 8.0 years ago by lukasz.galecki ▴ 10

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Answer: bioconductor packages on bioconda by James W. MacDonald 67k

The bioconda people are responsible for bioconda, so you should ask them if/when they are going to update.

Answer: txdb.mmusculus.ucsc.mm10.knowngene issue on X chromosome by James W. MacDonald 67k

The default for `plotKaryotype` is to use hg19.

Comment: Is it possible to parallelise saveHDF5SummarizedExperiment by Stefano Mangiola ▴ 20

saveTileDBSummarizedExperiment would be awesome. I think we need performance for execution time and memory required to save.

Comment: Create Illmina bead summary data by Liu • 0

Hi! Yes, thank you! I completely agree. I am just curious about how these two files are processed with AVG_Gre and detection p-value. I am …

Answer: Epic v2 Annotation CpG_maf source? by James W. MacDonald 67k

Those all come from dbSNP by way of UCSC. [See here][1], particularly lines 114 and onward. Here is no MAF for a CpG. The MAF is for the…

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Appropriate use of the function treat of the limma package

Comment: Is it recommended to analyze different tissues together when using edgeR

Answer: Deseq2 res Function

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification

Answer: ANOVA like approach of edgeR

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