Bioconductor PcaMethods

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pcaMethods pca

updated 2.0 years ago by James W. MacDonald 68k • written 2.0 years ago by yousavdj • 0

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pcaMethods

2.0 years ago yousavdj • 0

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PCAtools pcaExplorer pcaMethods

updated 3.6 years ago by Federico Marini ▴ 180 • written 3.6 years ago by m610110001 • 0

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OutlierD pcaMethods MicroarrayData Microarray

4.8 years ago waiyin0923 • 0

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pcaMethods

4.8 years ago Gero • 0

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pcaMethods

5.1 years ago k.vitting.seerup ▴ 120

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pcamethods

updated 7.3 years ago by James W. MacDonald 68k • written 7.3 years ago by johnnytam100 • 0

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pcamethods missing data

8.9 years ago eli-sava • 0

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pcamethods

updated 8.9 years ago by James W. MacDonald 68k • written 8.9 years ago by allantanaka11 • 0

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metaboliteData pcaMethods pcamethods r package metabolite Data

updated 9.2 years ago by Valerie Obenchain ★ 6.8k • written 9.2 years ago by lukasz.galecki ▴ 10

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pcamethods r

9.8 years ago stolarek.ir • 0

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pcaMethods pcaMethods

12.0 years ago • updated 11.9 years ago Julian Gehring ★ 1.3k

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pcaMethods pcaMethods

12.0 years ago Guest User ★ 13k

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pcaMethods pcaMethods

14.9 years ago Alfons Gonzalez ▴ 10

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pcaMethods pcaMethods

15.0 years ago Manca Marco PATH ▴ 340

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Clustering pcaMethods Clustering pcaMethods

15.8 years ago avinash gupta ▴ 130

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pcaMethods pcaMethods

updated 17.2 years ago by Wolfgang Huber ★ 13k • written 17.2 years ago by Yury Bukhman ▴ 20

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aroma.light pcaMethods aroma.light pcaMethods

updated 17.4 years ago by Sean Davis 21k • written 17.4 years ago by Tillinghast, Guy, M.D. ▴ 30

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impute pcaMethods impute pcaMethods

18.3 years ago De-Jian ZHAO ▴ 240

19 results • Page 1 of 1

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Comment: Which preprocessing steps are needed before running limpa? by miro165sabo • 0

Hi @gordonsmyth, thank you a lot for very fast and valuable response. I edited the question to provide more details.

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ? by Gordon Smyth 53k

I tend to use dpcCN(), because it more robust than dpc() to experiments with lots of samples and big differences between samples. You coul…

Answer: Which preprocessing steps are needed before running limpa? by Gordon Smyth 53k

Please see the example limpa analyses given at <http://github.com/smythlab/limpa>, especially the kidney cancer case study. limpa does not…

Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Korneel • 0

Thanks for the quick reply! If I understand correctly, I think if I keep track of the full lineage, I shouldn't have any risk of collapsin…

Comment: Pathway abundance data from Curatedmetagenomics by yesquokkan • 0

Hello, I was also wondering about the same issue. Did you figure it out?

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Answer: Which preprocessing steps are needed before running limpa?

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?

Answer: Which preprocessing steps are needed before running limpa?

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?

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Scholar to Gordon Smyth 53k

Popular Question to Peter Hickey ▴ 760