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Comment: can negative value microarray matrix data analysed by limma directly
by
Gordon Smyth
47k
The discussion on research gate is not of much value.
Answer: can negative value microarray matrix data analysed by limma directly
by
Gordon Smyth
47k
limma is routinely used for all the preprocessing methods that you mentioned, and some of them are covered in the limma User's Guide.
Not …
Answer: how can I do gene differential analysis on data after vst
by
Gordon Smyth
47k
Differential expression analysis of vst values can be performed by limma-trend.
Answer: Performing DE analysis using edgeR for PhIP-seq data with multiple samples, some
by
Gordon Smyth
47k
edgeR does not require replicates for every group, so there is no problem with that.
I can't make any comments on your code however. You d…
Comment: BiocGenerics package: 404 error during R shiny app deployment
by
dr
▴
10
Hi,
Were you able to find a solution? I'm having the same issue due to usage of a BioConductor package.
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