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Answer: Can VST-transformed community composition data be expressed as relative abundanc
The point of the VST is to make the data systematically homoskedastic (that is, not systematic trend of variance over mean, but not e.g. fo…
Comment: How to update a package at Bioconductor
thanks, just informed the original maintainer to send an email.
Comment: Error: biomaRt has encountered an unexpected server error.
Unfortunately, the BioMart LDS functionality have been flaky for a while now e.g. https://support.bioconductor.org/p/9143401/ , https:/…
Comment: Use with_go along with other filters in getBM function
Hi @rubbit0, I'm not sure I understand what you're trying to do. Do you have a long list of Ensembl Gene IDs and you're trying to select …
Comment: Adjusting for baseline when having longitudinal data, mixed model and no treat
Dear Gordon, these are my metadata. As you see some subject are missing for timepoint 1 Subject Timepoint 1 ID1 Baselin…
Dispersion plot -Interpretation -DESeq2
Answer: Dispersion Estimates and MA plots
DESeq2: When to split multiple group samples for 'more' accurate sizefactors, dispersions etc.
WGCNA coupled with differential expression analysis: question about baseline module detection
WGCNA with paired samples
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