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Comment: Ensembl down???
by
James W. MacDonald
64k
I normally caution against mapping between annotation sources (NCBI and Ensembl), as it usually doesn't work well. However, it is possible.…
Answer: NCBI protein conversion to CDNA and NCBI gene (in R)
by
James W. MacDonald
64k
I already showed you how to do this for gene symbols, and it's analogous for any other annotation ID. Please see the `AnnotationDbi` [vigne…
Comment: Obtaining rsIDs with ENSG and variant ID information
by
Robert Castelo
★
3.0k
This is a large package, and when downloading and installing large packages it's often the case to get timeouts. Try setting a longer time …
Comment: How does Deseq2 deal with the row with zero when calculating size factors
by
ATpoint
★
3.6k
> Because I found that if there is at least one gene without zero among all of the samples, the deseq2 runs smoothly.
No, it doesn't.
``…
Comment: Obtaining rsIDs with ENSG and variant ID information
by
bd2000
•
0
Thank you for your answer. I've tried to download the package but it didn't work:
Error in download.file(url, destfile, method, mode =…
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