Bioconductor Mutational signature

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software error bioconductor mutational signature

8.8 years ago christos.hatzis • 0

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somatic signature mutational signature

updated 9.3 years ago by Julian Gehring ★ 1.3k • written 9.3 years ago by sj1 ▴ 10

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mutational signature somaticSignatures

updated 9.4 years ago by Julian Gehring ★ 1.3k • written 9.4 years ago by ksivapra • 0

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mutational signature

updated 9.6 years ago by Julian Gehring ★ 1.3k • written 9.6 years ago by shengfeng • 0

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mutational signature

updated 10.2 years ago by Julian Gehring ★ 1.3k • written 10.2 years ago by Asma rabe ▴ 290

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somaticsignatures mutational signature

updated 10.2 years ago by chang02_23 ▴ 30 • written 11.0 years ago by muller.etienne ▴ 30

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Comment: Sharing a collection of datasets in ExperimentHub by Peter Hickey ▴ 760

The [**scRNAseq**](https://bioconductor.org/packages/scRNAseq/) package ([source on GitHub](https://github.com/LTLA/scRNAseq)) might serve …

Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi by ReinholdGaylord99 • 0

Thank you so much! https://www.nature.com/articles/s41467-021-25960-2/ [geometry dash lite](https://geometrydashlite.online)

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by Gordon Smyth 53k

I'm not sure that I understand. You have a dataset that, even after pseudo-bulking, still has 6000 samples? That is surprising. Retaining …

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by abaed • 0

Hello again @gordonsmyth, I've now applied the analysis using a more detailed annotation of cell types/clusters, which includes about 100 …

Answer: Sharing a collection of datasets in ExperimentHub by shepherl 4.2k

107 packages would be a lot! It is certainly possible (and recommended) to implement one package that utilizes ExperimentHub for controlli…