Bioconductor Nf-core

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salmon edgeR tximport nf-core gene_counts

updated 9 months ago by i.atanasoai • 0 • written 24 months ago by mohammedtoufiq91 ▴ 10

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Answer: Meffil: error in functional normalization function (Error in rg.to.mu(rg, probes by a.alkema • 0

Oh, that's silly - thanks, will do!

Answer: Meffil: error in functional normalization function (Error in rg.to.mu(rg, probes by James W. MacDonald 67k

This support site is meant to provide support for Bioconductor packages, but `Meffil` is not part of Bioconductor. You could presumably con…

Comment: Unused arguments error without used arguments in GSVA? by Axel Klenk ★ 1.1k

> It looks like the ssgseaParam function might not be passing the > correct parameters to GSVA::gsva() Apparently because of the extra com…

Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu by franknappi14 • 0

I tried it and it's working properly.

Answer: accounting for vs. removing batch effects with DESeq2 in RNAseq analysis by ATpoint ★ 4.6k

The vignette covers batch effects as per the authors best practice, please read it and consider following it.

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