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Comment: Mixed up sample info with plotPCA
by
Michael Love
40k
Check colnames of count data.
I think you are providing these in different order to DESeq2.
Comment: Mixed up sample info with plotPCA
by
sara.jacobson
•
0
Ok, thank you. This is everything from my session:
> library("ggplot2")
> library("dplyr")
Attaching package: 'dplyr'
…
Answer: Gviz: UcscTrack and "GC Percent" information
by
Daniel E. Weeks
▴
20
**Answer**
In
https://github.com/ivanek/Gviz/issues/71
an update that fixes this issue was documented - there it is stated that "…
Comment: Biostrings error at retrieving protein sequences
by
James W. MacDonald
63k
It depends on what kind of whitespace it is. If the whitespace is just a space, then it will work. But if it's a tab, it won't.
```
> gsub…
Comment: Biostrings error at retrieving protein sequences
by
nromerov
•
0
If i write it like
```r
gsub(" .*", "", names(protein_sequences))
```
it will delet all the extra information if it is on the AAString…
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