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Comment: Using the plotting functions of clusterProfiler / enrichplot with enrichment res
by
Kazuna
• 0
Dear Charles, I am so impressed the way you handled this! Thank you! Could you teach me how you created geneSets list? Did you use getgo()…
Answer: Fail to run RupRadar
by
sergisayolspuig
▴ 80
Hi Qingwei, dupRadar is using `Rsubread::featureCounts()` under the hood to count reads on features of the GTF. By default, `Rsubread::fea…
Comment: Can Differential Isoform expression analysis can be performed using DESeq2 packa
by
priyanka.m
• 0
Hi Michael, I performed Differential isoform expression analysis using Swish and have got some isoforms. I had previously performed the g…
Comment: CPM after RUVseq
by
James W. MacDonald
59k
Also, you might be confused about something. CPM is counts/million counts, which *uses library size to scale normalize* and logCPM is just…
Comment: CPM after RUVseq
by
James W. MacDonald
59k
You shouldn't use CPM or logCPM for any of the steps! To use `RUVr` you need to fit a preliminary model using `edgeR`, which takes counts a…
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A: Using the plotting functions of clusterProfiler / enrichplot with enrichment res
Answer: CPM after RUVseq
Comment: Merging two plated in R
Answer: Merging two plated in R
Answer: Merging two plated in R
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