Recent ...
Replies
Comment: Using the plotting functions of clusterProfiler / enrichplot with enrichment res
by
Kazuna
•
0
Dear Charles,
I am so impressed the way you handled this! Thank you!
Could you teach me how you created geneSets list? Did you use getgo()…
Answer: Fail to run RupRadar
by
sergisayolspuig
▴
80
Hi Qingwei,
dupRadar is using `Rsubread::featureCounts()` under the hood to count reads on features of the GTF. By default, `Rsubread::fea…
Comment: Can Differential Isoform expression analysis can be performed using DESeq2 packa
by
priyanka.m
•
0
Hi Michael,
I performed Differential isoform expression analysis using Swish and have got some isoforms. I had previously performed the g…
Comment: CPM after RUVseq
by
James W. MacDonald
59k
Also, you might be confused about something. CPM is counts/million counts, which *uses library size to scale normalize* and logCPM is just…
Comment: CPM after RUVseq
by
James W. MacDonald
59k
You shouldn't use CPM or logCPM for any of the steps! To use `RUVr` you need to fit a preliminary model using `edgeR`, which takes counts a…
Awards
• All
Scholar to
Guido Hooiveld
★
3.2k
Teacher to
Gordon Smyth
45k
Scholar to
James W. MacDonald
59k
Popular Question to
Lluís Revilla Sancho
▴
660
Locations
• All
Ireland, 1 minute ago
United States, 4 minutes ago
Wageningen University, Wageningen, the Netherlands, 9 minutes ago
WEHI, Melbourne, Australia, 10 minutes ago
France, 10 minutes ago
Ireland, 1 minute ago
United States, 4 minutes ago
Wageningen University, Wageningen, the Netherlands, 9 minutes ago
WEHI, Melbourne, Australia, 10 minutes ago
France, 10 minutes ago
Traffic: 543 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6