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Comment: rename phenotypic variables in pData (microarray) or colData (RNA-Seq)
by
Basti
▴
330
Could you share an example of your dataset( `dput(...)`) ? I tried with a random ExpressionSet and `names(p(Data(dataset))[1] <- "New_VAR"`…
Comment: rename phenotypic variables in pData (microarray) or colData (RNA-Seq)
by
jogugil
•
0
names(pData(microarray))[1]<- "NEW_VAR"
It doesn't work, it gives the following error:
invalid (NULL) left side of assignment
you canno…
Answer: Can't Install ensembldb and EnsDb.Hsapiens.v86
by
elmfinds
•
0
Thank you mbk0asis and Johannes! Installing png solved my issue. I appreciate your help!
Comment: Combine GRanges(List) to a single GRanges with unified breakpoints
by
Rodrigo
•
0
Hi @malcolm-cook-6293 ,
Thanks again for the help. The code got me started albeit, I changed a bit the handling of the metadata.
```
#'…
Comment: how to get the gene set from online GO database
by
pengmin.wang.1
•
0
thank you for your information. But I can't run this:
```{r}
hub <- AnnotationHub()
```
Error in UseMethod("filter_") :
no applicable me…
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