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Answer: msPurity::spectralMatching Error in getSmeta(con, pids) : No meta data for spect
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thomas.nigel.lawson
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This has been resolved (Windows Firewall issue) - see github issue https://github.com/computational-metabolomics/msPurity/issues/100
Answer: DESeq2 parameter infernce
by
Michael Love
39k
We use IRLS which is related to Newton-Raphson method. I suppose you can use any optimization method you prefer. We also sometimes use L-BF…
Answer: DESeq2 with 2 continuous factors, LRT, coeficients and slope
by
Michael Love
39k
See `?results` which describes what the LFC is when you perform an LRT: "*For analyses using the likelihood ratio test*..."
Also in the …
Answer: DESeq2 with sample effect, unequal sample sizes
by
Michael Love
39k
For statistical analysis plans such as design and coefficient interpretation, I recommend collaborating with a local statistician or someon…
Comment: Bioconductor tool for curating annotations?
by
Lluís Revilla Sancho
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700
I think you can find those transcripts not overlapping with a GRanges object easily via ?GenomicRanges::setdiff, but I don't know how to an…
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