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pqsfinder
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pqsfinder gives: invalid class “PQSViews” object: undefined class for slot "elementMetadata" error message
pqsfinder
4.0 years ago
hwu12
▴ 10
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Can't install 'pqsfinder'
pqsfinder
5.9 years ago
aabarnes2
• 0
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Comment: How to generate circular cnetplot and color nodes and edges in the same plot ?
by
Blandine
• 0
Thank you so much ! It's working !
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
by
James W. MacDonald
67k
Yes. If you have the Illumina IDs, then all the annotation data that `cpg.annotate` uses will be based on hg19. It doesn't matter if TCGA l…
Comment: Recount3 data correspond to TCGA data
by
Leonardo Collado Torres
★ 1.1k
Thanks @fep29! ^^
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
by
Prakash Sah
• 0
I am in a similar situation. So, I have a matrix of beta values with row names as probe ids (which are annotated to hg38 as it is from harm…
Comment: WGCNA: Can we use high power (26) for signed network?
by
Vinesh
• 0
Hello, Thank you for the response. I have already raised the same question on biostars.
Votes
Comment: Recount3 data correspond to TCGA data
Answer: DESeq2- merging technical vs biological replicates
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How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.
Answer: EdgeR Biological CVs
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