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Microarray impute PROcess convert mmgmos puma tigre trigger Microarray impute PROcess

updated 10.2 years ago by Solanki, Anisha ▴ 60 • written 10.2 years ago by Antti Honkela ▴ 50

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impute PROcess mmgmos puma impute PROcess mmgmos puma

10.2 years ago Solanki, Anisha ▴ 60

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PROcess mmgmos puma PROcess mmgmos puma

updated 10.2 years ago by Antti Honkela ▴ 50 • written 10.2 years ago by Solanki, Anisha ▴ 60

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PROcess mmgmos puma PROcess mmgmos puma

10.2 years ago Solanki, Anisha ▴ 60

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Microarray Normalization limma marray puma Microarray Normalization limma marray puma

updated 3.2 years ago by Gordon Smyth 50k • written 11.0 years ago by Ellen Sebastian ▴ 20

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puma DEXSeq puma DEXSeq

11.1 years ago Natasha ▴ 440

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puma puma

13.5 years ago Alberto Goldoni ▴ 420

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cdf GEOquery puma cdf GEOquery puma

13.5 years ago Manca Marco PATH ▴ 340

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Microarray Annotation Normalization vsn bgx puma Microarray Annotation Normalization vsn

updated 13.9 years ago by Benilton Carvalho ★ 4.3k • written 13.9 years ago by Rainer Tischler ▴ 60

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miRNA GO limma puma miRNA GO limma puma

updated 16.0 years ago by Deepayan Sarkar ▴ 220 • written 16.0 years ago by Paul Geeleher ★ 1.3k

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puma puma

updated 16.0 years ago by Richard Pearson ▴ 390 • written 16.0 years ago by Paul Geeleher ★ 1.3k

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puma puma

16.1 years ago Paul Geeleher ★ 1.3k

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puma puma

updated 16.2 years ago by Richard Pearson ▴ 390 • written 16.2 years ago by Paul Geeleher ★ 1.3k

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Comment: significant difference of p-values with dream() after updating VariancePartition by gabriel.hoffman ▴ 100

See variancePartition updates for [v1.33.11](https://diseaseneurogenomics.github.io/variancePartition/news/index.html#variancepartition-133…

Comment: A ComBat-seq issue: the covariates are confounded by W. Evan Johnson ▴ 850

This is only partially confounded because there is overlap between the batches -- they both have GFP controls that can be used to remove ba…

Answer: Different number of exons in reference genome affects DEXSeq analysis by Alejandro Reyes ★ 1.9k

Likely the new annotation that you are using has more annotated isoforms, and thus the exons are splitted into more disjoint exonic bins. I…

Answer: Adding columns to DEXSeqResults object by Alejandro Reyes ★ 1.9k

I'd have a look into the match function, that could give you a mapping between the ids in the dxr1 object and your data frame of gene symbo…

Answer: rlog transformation by Michael Love 41k

It is dependent on the other samples in the dataset.

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Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos

Using GRanges and IRanges to simply get all chromosome data

A: Using GRanges and IRanges to simply get all chromosome data

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Popular Question to W. Evan Johnson ▴ 850

Popular Question to Alejandro Reyes ★ 1.9k