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puma
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reset
0
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6
replies
1.7k
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Puma question
cdf
GEOquery
puma
cdf
GEOquery
puma
13.6 years ago
Manca Marco PATH
▴ 340
0
votes
1
reply
877
views
Screeplot in puma package
puma
puma
updated 16.0 years ago by
Richard Pearson
▴ 390 • written 16.0 years ago by
Paul Geeleher
★ 1.3k
0
votes
6
replies
1.7k
views
Analyze miRNA experiment in Bioconductor
miRNA
GO
limma
puma
miRNA
GO
limma
puma
updated 16.0 years ago by
Deepayan Sarkar
▴ 220 • written 16.0 years ago by
Paul Geeleher
★ 1.3k
0
votes
4
replies
1.8k
views
gc-rma and vsn normalization for rat microarray data
Microarray
Annotation
Normalization
vsn
bgx
puma
Microarray
Annotation
Normalization
vsn
updated 13.9 years ago by
Benilton Carvalho
★ 4.3k • written 13.9 years ago by
Rainer Tischler
▴ 60
0
votes
10
replies
1.6k
views
Running Pumacomb on both cores of dual-core machine
puma
puma
updated 16.2 years ago by
Richard Pearson
▴ 390 • written 16.2 years ago by
Paul Geeleher
★ 1.3k
0
votes
4
replies
3.8k
views
*** caught segfault *** ....cause 'invalid permissions' with PUMA pachage
puma
puma
13.5 years ago
Alberto Goldoni
▴ 420
0
votes
1
reply
1.2k
views
Unexpected output from Limma background subtraction & Normalization
Microarray
Normalization
limma
marray
puma
Microarray
Normalization
limma
marray
puma
updated 3.2 years ago by
Gordon Smyth
50k • written 11.0 years ago by
Ellen Sebastian
▴ 20
0
votes
1
reply
931
views
Tigre Package question 2
PROcess
mmgmos
puma
PROcess
mmgmos
puma
updated 10.2 years ago by
Antti Honkela
▴ 50 • written 10.2 years ago by
Solanki, Anisha
▴ 60
0
votes
2
replies
1.3k
views
Tigre Package question 3
Microarray
impute
PROcess
convert
mmgmos
puma
tigre
trigger
Microarray
impute
PROcess
updated 10.2 years ago by
Solanki, Anisha
▴ 60 • written 10.2 years ago by
Antti Honkela
▴ 50
0
votes
0
replies
831
views
Running Pumacomb on both cores of dual-core machine
puma
puma
16.2 years ago
Paul Geeleher
★ 1.3k
0
votes
0
replies
820
views
FW: Tigre Package question 2
PROcess
mmgmos
puma
PROcess
mmgmos
puma
10.2 years ago
Solanki, Anisha
▴ 60
0
votes
0
replies
1.0k
views
DEXSeq html report error
puma
DEXSeq
puma
DEXSeq
11.1 years ago
Natasha
▴ 440
0
votes
0
replies
971
views
FW: Tigre Package question 3
impute
PROcess
mmgmos
puma
impute
PROcess
mmgmos
puma
10.2 years ago
Solanki, Anisha
▴ 60
13 results • Page
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Replies
Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …
Answer: Once again a "Model matrix not full rank"
by
swbarnes2
★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19 (as at 4 May 2024). In the meantime, you could consider using the goana() and kegga() …
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
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