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Answer: modelGeneVarByPoisson error selecting bandwidth automatically
by
Peter Hickey
▴ 740
Without a reproducible example or access to the data, it's a bit hard to say. I assume the examples work for you (`example("modelGeneVarBy…
Comment: DESeq2 and shrinkage of log2 fold changes
by
Shannon
• 0
Hi Mike, would you mind clarifying where the lfcShrink is enabled "by default"? As you also mentioned above "The difference between results…
Comment: SeSAMe DMR for EPIC V2
by
zhouwanding
▴ 10
My guess is that the input has a suffix-removed probe id for EPICv2 data. We will add a fix to that in the DMR function in a few days. But …
Comment: EnsDb: bad_weak_ptr
by
James W. MacDonald
66k
You cannot save and reuse an `EnsDb` object like that, as it's mostly just a pointer to a SQLite Db and functions to query it. ``` library…
Comment: EnsDb: bad_weak_ptr
by
shepherl
3.9k
It seems to be an issue with the saveRDS and readRDS and not the hubs ``` > aqh EnsDb for Ensembl: |Backend: SQLite |Db type: EnsDb |Type …
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Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
Answer: DESeq2 - vst() - log2FC - no replicates
Answer: Warning message when running limma with covariates
Answer: Warning message when running limma with covariates
Comment: Limma with covariates
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