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Answer: Allele frequencies for ALL alleles of one SNP ?
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Abiologist
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0
I've discovered that rsnps::ncbi_snp_query(snp_id) does actually give this information - at the bottom of the result$maf_population table. …
Answer: Identifying potentially associated gene set to drug response using GSVA
by
Robert Castelo
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3.4k
Hi, if you want to do some formal inference about the effect of a drug at RNA level, then I would recommend you doing a differential expres…
Answer: How to get The evolutionary conservation scores for lncRNAs by the phastCons100w
by
Robert Castelo
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3.4k
The `phastCons100way.UCSC.hg38` annotation package, storing conservation scores of the human genome version `hg38`, should be queried with …
Comment: Package needs internet access
by
firestar
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20
That worked! Thanks! I created the genome file locally and uploaded that. I didn't really think that BSgenome.Hsapiens.UCSC.hg38 was only u…
Comment: limma technical repeat correction
by
john
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0
Hi @gordonsmyth,
Thank you very much for your response.
The normalization process involves multiple steps and they provide a normalised f…
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