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Comment: Which input file is used for DGEList in EgdeR?
by
Michael Love
39k
It does output the Salmon files, and it is documented here:
https://nf-co.re/rnaseq/output#pseudo-alignment-and-quantification
The first …
Comment: Which input file is used for DGEList in EgdeR?
by
Michael Love
39k
Does it output Salmon files (directories with `quant.sf` in them)?
That would be the easiest. These files you have above are processed and…
Answer: Log2Fold change interpretation - Continuous predictor variable
by
Michael Love
39k
It can be more sensitive than binary versions, this has been written about in statistical literature.
But most of all I would encourage …
Comment: DESeq2 and heatmap for multiple comparisons
by
artem.vorobyev
•
0
this I already did.
My question is how to visualize differentially expressed genes on the heatmap for all 3 groups (healty->lesion->treat…
Comment: athPkgBuilder data source :missing probesets
by
nicklesteele532
•
0
> >>>
> >>> How to handle the one probeset to multiple locus mappings? I can
> >think 3
> >>> possible solutions:
> >>> 1. pick the "best" …
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