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Comment: Need help converting vcf files to snp
by
patrice.bridges457
• 0
it also mentions the files cannot be larger than 1gb. my files arew between 3-5 gb.
Answer: Installing annotation package in locally
by
James W. MacDonald
67k
That's not how to save an `OrgDb` you got from `AnnotationHub`. The usual way of doing that is to download it the one time, and then it wil…
Comment: Need help converting vcf files to snp
by
James W. MacDonald
67k
That website specifically calls for VCF files, which is what you say you have.
Comment: Need help converting vcf files to snp
by
patrice.bridges457
• 0
This is the link to the website I was trying to upload it to. Any other website denies my files saying it is the incorrect format. https://…
Answer: MethylKit CpG Island annotation for Hg38
by
James W. MacDonald
67k
I wouldn't use `liftOver`, as you will likely get fragmentation of the islands (possibly across different chromosomes). It's simple enough …
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