Bioconductor Rna-seq

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RNA-seq DESeq2

updated 18 hours ago by ATpoint ★ 4.1k • written 2 days ago by Reza • 0

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rna-seq edgeR

updated 14 days ago by Gordon Smyth 50k • written 27 days ago by Netanel • 0

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deseq2 edgeR rna-seq

updated 17 days ago by Elizabeth • 0 • written 8.8 years ago by gthm ▴ 30

3 results • Page 1 of 1

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Comment: Why does GSEA on edgeR results for randomized samples give highly significant p- by Chris • 0

Intent to delete when going home. Sorry for that!

Comment: Why does GSEA on edgeR results for randomized samples give highly significant p- by Gordon Smyth 50k

Please ask you own question. Inserting your own dataset into someone else's question like this is very impolite. I have already answered m…

Comment: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

limma most certainly is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of …

Comment: package goseq seems to be not available on the latest version of R by Patrycja ▴ 20

limma package also isn't available.Is there any information when these packages will be available?

Comment: Why does GSEA on edgeR results for randomized samples give highly significant p- by Chris • 0

Thanks Gordon for the advice!

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Answer: fgsea significant result

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