Bioconductor Rna-seq

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deseq2 edgeR rna-seq

updated 17 days ago by Elizabeth • 0 • written 8.8 years ago by gthm ▴ 30

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rna-seq edgeR

updated 14 days ago by Gordon Smyth 50k • written 27 days ago by Netanel • 0

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RNA-seq DESeq2

updated 10 hours ago by ATpoint ★ 4.1k • written 2 days ago by Reza • 0

3 results • Page 1 of 1

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Comment: fgsea significant result by Chris • 0

Thanks ATpoint! Setting a fixed seed can reproduce the same result. However, if someone else analyze the same data with different seed, the…

Comment: SGSeq: moving toward diffex from SGSeq analysis by Sara • 0

Thank you for your response. I have another question about saving the sgvc result as a CSV file. I would appreciate your help, please. ``` …

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

I tried different block lengths first and considered 100000 to be ideal because of the almost similar inter-range distance. S1= bootRange…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

The segmentation and block length are key parameters. We recommend for example blocks of length ~500kb. It would help if you would post yo…

Answer: Handling multiple differential expression comparisons by Michael Love 41k

It's typical that results are presented with each group having its own FDR control. So presenting each comparison with the adjusted p-va…

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Answer: fgsea significant result

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