Bioconductor Sbml

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SBMLR sbml rsbm rsbml

updated 12 months ago by Michael Love 43k • written 12 months ago by isasg ▴ 10

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R sbml rsbml mac os x

8.6 years ago resuper ▴ 10

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sbml rsbml

updated 9.5 years ago by Michael Lawrence ★ 11k • written 9.5 years ago by srinadee • 0

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sbml sbmlr r

updated 9.5 years ago by radivot ▴ 20 • written 9.5 years ago by srinadee • 0

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Comment: ISO a solution to rank-order introns by transcript by mat149 ▴ 80

Hey, In revisiting this question, the following code works for the '+' strand. I am having issues with demarcating intron rank by transcri…

Comment: Normalizing batch effects using technical replicates for DGE analysis between tw by Gordon Smyth 52k

Since the intra-block correlation is negative, it would be best to remove `block` from the model. My experience with genetically identical…

Comment: Normalizing batch effects using technical replicates for DGE analysis between tw by anna.cot.anna.cot ▴ 30

Thank you! This is actually quite close to my real dataset. I simplified the names to make it easier as an example, but I have now correcte…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Tim Peters ▴ 200

Hi Xiaofei, Is it possible to generate a matrix of beta values or M-values with rownames as probe IDs from this data? If so, cpg.annotate(…

Comment: Normalizing batch effects using technical replicates for DGE analysis between tw by Gordon Smyth 52k

That looks basically correct, although the terms that you are inputing to `makeContrasts` do not match the condition names in the targets f…

Votes

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

Answer: nightmare to make custom txdb for genomes from ToxoDB

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