Bioconductor Sbml

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SBMLR sbml rsbm rsbml

updated 2.1 years ago by Michael Love 43k • written 2.1 years ago by isasg ▴ 10

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R sbml rsbml mac os x

9.7 years ago resuper ▴ 10

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sbml rsbml

updated 10.6 years ago by Michael Lawrence ★ 11k • written 10.6 years ago by srinadee • 0

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sbml sbmlr r

updated 10.6 years ago by radivot ▴ 20 • written 10.6 years ago by srinadee • 0

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Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k

It is fine for your mass spec facility to include blank samples as part of their internal QC, but such samples should not in my opinion be …

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0

Hm, okay, in building a fake model by hand I think I'm realizing the problem: `mouse` and its variants are ideally acting as basically a ra…

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0

Ah, this is handy! Hopefully this will help with troubleshooting; at the very least, I can see it being helpful when I try to explain to pe…

Answer: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Michael Love 43k

You may want to look at the coefficients you are trying to estimate with ExploreModelMatrix: https://www.bioconductor.org/packages/relea…

Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by emily.wolfrum • 0

Hi Gordon, Thanks for the quick reply. The technical or process blank samples I'm referring to are part of a set of quality control sampl…

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A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen

Comment: limpa analysis advice

Answer: When to use edgeR or limma

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