Bioconductor Rsbml

Showing : rsbml • reset

votes

replies

634

views

rsbml

2.7 years ago Robert Dunne ▴ 10

vote

replies

660

views

rsbml

2.7 years ago Robert Dunne ▴ 10

votes

replies

983

views

rsbml R CellDesigner

updated 4.5 years ago by Michael Lawrence 11k • written 4.6 years ago by tjal0001 • 0

votes

616

views

rsbml R

updated 4.6 years ago by Michael Lawrence 11k • written 4.6 years ago by tjal0001 • 0

votes

replies

1.4k

views

rsbml piano libsbml gene set enrichment analysis

updated 4.9 years ago by Michael Lawrence 11k • written 4.9 years ago by jan.strauss • 0

votes

2.2k

views

rsbml libsbml

updated 5.1 years ago by Michael Lawrence 11k • written 5.1 years ago by jedrzej.szymanski • 0

votes

replies

1.8k

views

rsbml compilation error configure

6.8 years ago zeb • 0

votes

replies

1.6k

views

rsbml BiGGR

7.3 years ago enrico.moiso • 0

vote

replies

890

views

R sbml rsbml mac os x

7.4 years ago resuper ▴ 10

votes

907

views

rsbml

7.4 years ago ivo • 0

votes

replies

1.9k

views

rsbml rsbml

updated 7.5 years ago by den.kazakiewicz • 0 • written 12.6 years ago by Paul Shannon ★ 1.1k

votes

replies

1.4k

views

rsbml

updated 7.7 years ago by Michael Lawrence 11k • written 7.7 years ago by haroon.maximas • 0

votes

1.2k

views

sbml rsbml

updated 8.2 years ago by Michael Lawrence 11k • written 8.3 years ago by srinadee • 0

votes

replies

1.5k

views

graph rsbml graph rsbml

updated 10.1 years ago by Stefan Gries ▴ 50 • written 10.1 years ago by Michael Lawrence 11k

votes

replies

965

views

Network graph convert rsbml Network graph convert rsbml

10.2 years ago Michael Lawrence 11k

votes

replies

1.4k

views

graph rsbml graph rsbml

updated 10.3 years ago by Michael Lawrence 11k • written 10.3 years ago by Stefan Gries ▴ 50

votes

replies

1.4k

views

rsbml rsbml

10.3 years ago Guest User ★ 12k

votes

replies

859

views

rsbml rsbml

11.4 years ago Michael Lawrence 11k

votes

replies

1.4k

views

rsbml rsbml

updated 11.5 years ago by Michael Lawrence 11k • written 11.5 years ago by hettling ▴ 60

votes

1.2k

views

rsbml rsbml

updated 12.3 years ago by Michael Lawrence 11k • written 12.3 years ago by Jie Bao ▴ 10

votes

replies

702

views

rsbml rsbml

updated 12.9 years ago by Michael Lawrence 11k • written 12.9 years ago by pj dias ▴ 60

votes

896

views

rsbml rsbml

updated 13.6 years ago by Michael Lawrence 11k • written 13.6 years ago by Rainer Machne ▴ 60

votes

replies

1.5k

views

rsbml rsbml

updated 15.0 years ago by Sean Davis 21k • written 15.0 years ago by Richard Birnie ▴ 30

23 results • Page 1 of 1

Recent ...

Replies

Comment: DESeq2, results(dds, name = <reference>) interpretation results by Rockbar • 0

When I apply the model.matrix approach for getting the contrasts, the code > mod_mat <- model.matrix(design(dds), colData(dds)) > CondA.t…

Comment: DESeq2, results(dds, name = <reference>) interpretation results by Rockbar • 0

Yes, I agree, the correct contrast setting is quite challenging. The vignette says >contrast: a list of 2 character vectors: the names of…

Comment: Does countsFromAbundance="lengthScaledTPM" produce un-normalized counts? by Michael Love 40k

Advantage and disadvantage depends on the aim, what you plan to do with them (testing, plots, etc.). lengthScaledTPM puts back *in* the ge…

Comment: DESeq2, results(dds, name = <reference>) interpretation results by James W. MacDonald 63k

No, putting -1 in the design matrix is a cell means model, which is the opposite. If you used `~ Cond + Cond:Time`, you would specify a fac…

Comment: Does countsFromAbundance="lengthScaledTPM" produce un-normalized counts? by Christian • 0

Thank you for the response and apologies for my late reply. I think I´m starting getting the concept now. The hints with the cqn is quite …

Votes

Answer: Does countsFromAbundance="lengthScaledTPM" produce un-normalized counts?

Answer: Remove duplicates of colData in TreeSummarizedExperiment

Awards • All

Scholar to James W. MacDonald 63k