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Answer: Limma-voom with inverse probability weights
by
Gordon Smyth
47k
One point is that you are not multiplying the weights correctly. `w` is an n-vector of sample weights and `v$weights` is a G x n matrix of …
Comment: error in ChAMP loading file
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Benth
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0
Shouldn't this p-value, which I presume shows the significance of the fold change, be scale-independent? Additionally, shouldn't all of the…
Comment: AnnotationForge::makeOrgPackageFromNCBI - ERROR to access url (NCBI FTP site)
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jeffbrick852
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0
[us customer service][1]
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Answer: DEG analysis with Paired-end RNA-seq data using DESeq2, do I need to contain the
by
swbarnes2
★
1.2k
The vignette includes that in the design because the example is a mix of single and paired end reads, and that is added to the design so th…
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
Gordon Smyth
47k
`PoolStatus` just indicates whether a sample is a pool or not, i.e., the first option.
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